IL_6YEF_185
3D structure
- PDB id
- 6YEF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S initiation complex with assigned rRNA modifications from Staphylococcus aureus
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UGCAU*AUG
- Length
- 8 nucleotides
- Bulged bases
- 6YEF|1|a|C|1065
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6YEF_185 not in the Motif Atlas
- Homologous match to IL_4LFB_044
- Geometric discrepancy: 0.1889
- The information below is about IL_4LFB_044
- Detailed Annotation
- Isolated cWS basepair
- Broad Annotation
- No text annotation
- Motif group
- IL_76319.5
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 3
Unit IDs
6YEF|1|a|U|1063
6YEF|1|a|G|1064
6YEF|1|a|C|1065
6YEF|1|a|A|1066
6YEF|1|a|U|1067
*
6YEF|1|a|A|1214
6YEF|1|a|U|1215
6YEF|1|a|G|1216
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain c
- 30S ribosomal protein S3
- Chain j
- ribosomal protein uS10
- Chain n
- 30S ribosomal protein S14
- Chain v
- mRNA
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