IL_6YEF_186

3D structure

PDB id

6YEF (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex with assigned rRNA modifications from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CCAUC*GGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YEF_186 not in the Motif Atlas

Geometric match to IL_2OEU_001

Geometric discrepancy: 0.3191

The information below is about IL_2OEU_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_24466.1

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

9

Unit IDs

6YEF|1|a|C|1139
6YEF|1|a|C|1140
6YEF|1|a|A|1141
6YEF|1|a|U|1142
6YEF|1|a|C|1143
*
6YEF|1|a|G|1152
6YEF|1|a|G|1153
6YEF|1|a|G|1154

Current chains

Chain a

16S rRNA

Nearby chains

Chain i

30S ribosomal protein S9