IL_6YHS_016
3D structure
- PDB id
- 6YHS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Acinetobacter baumannii ribosome-amikacin complex - 50S subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GAAAC*GUGAUAGC
- Length
- 13 nucleotides
- Bulged bases
- 6YHS|1|1|G|792, 6YHS|1|1|G|796
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6YHS_016 not in the Motif Atlas
- Geometric match to IL_5J7L_260
- Geometric discrepancy: 0.1067
- The information below is about IL_5J7L_260
- Detailed Annotation
- tHW-tHW cross-strand stack
- Broad Annotation
- No text annotation
- Motif group
- IL_54041.2
- Basepair signature
- cWW-L-R-L-R-tWH-L-cWW
- Number of instances in this motif group
- 7
Unit IDs
6YHS|1|1|G|665
6YHS|1|1|A|666
6YHS|1|1|A|667
6YHS|1|1|A|668
6YHS|1|1|C|669
*
6YHS|1|1|G|790
6YHS|1|1|U|791
6YHS|1|1|G|792
6YHS|1|1|A|793
6YHS|1|1|U|794
6YHS|1|1|A|795
6YHS|1|1|G|796
6YHS|1|1|C|797
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain C
- 50S ribosomal protein L4
- Chain H
- 50S ribosomal protein L15
Coloring options: