IL_6YHS_036

3D structure

PDB id

6YHS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Acinetobacter baumannii ribosome-amikacin complex - 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GAAG*CGGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YHS_036 not in the Motif Atlas

Homologous match to IL_5J7L_283

Geometric discrepancy: 0.1787

The information below is about IL_5J7L_283

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

6YHS|1|1|G|1028
6YHS|1|1|A|1029
6YHS|1|1|A|1030
6YHS|1|1|G|1031
*
6YHS|1|1|C|1104
6YHS|1|1|G|1105
6YHS|1|1|G|1106
6YHS|1|1|C|1107

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L6

Chain R

50S ribosomal protein L25