IL_6YHS_042
3D structure
- PDB id
- 6YHS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Acinetobacter baumannii ribosome-amikacin complex - 50S subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CCAAC*GGG
- Length
- 8 nucleotides
- Bulged bases
- 6YHS|1|1|G|1320
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6YHS_042 not in the Motif Atlas
- Homologous match to IL_5J7L_291
- Geometric discrepancy: 0.0904
- The information below is about IL_5J7L_291
- Detailed Annotation
- C-loop
- Broad Annotation
- No text annotation
- Motif group
- IL_63596.11
- Basepair signature
- cWW-cWS-cSH-tWH-cWW-L
- Number of instances in this motif group
- 19
Unit IDs
6YHS|1|1|C|1307
6YHS|1|1|C|1308
6YHS|1|1|A|1309
6YHS|1|1|A|1310
6YHS|1|1|C|1311
*
6YHS|1|1|G|1319
6YHS|1|1|G|1320
6YHS|1|1|G|1321
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain O
- 50S ribosomal protein L22
- Chain P
- 50S ribosomal protein L23
Coloring options: