IL_6YHS_073

3D structure

PDB id

6YHS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Acinetobacter baumannii ribosome-amikacin complex - 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CAG*CGUAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YHS_073 not in the Motif Atlas

Homologous match to IL_5J7L_332

Geometric discrepancy: 0.5248

The information below is about IL_5J7L_332

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61476.2

Basepair signature

cWW-tSH-L-cWW-L

Number of instances in this motif group

7

Unit IDs

6YHS|1|1|C|2286
6YHS|1|1|A|2287
6YHS|1|1|G|2288
*
6YHS|1|1|C|2306
6YHS|1|1|G|2307
6YHS|1|1|U|2308
6YHS|1|1|A|2309
6YHS|1|1|G|2310

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain 5

5S ribosomal RNA; 5S rRNA

Chain D

50S ribosomal protein L5