IL_6YHS_086
3D structure
- PDB id
- 6YHS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Acinetobacter baumannii ribosome-amikacin complex - 50S subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- UUGAG*CAAGAUAAG
- Length
- 14 nucleotides
- Bulged bases
- 6YHS|1|1|A|2769
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6YHS_086 not in the Motif Atlas
- Homologous match to IL_4WF9_099
- Geometric discrepancy: 0.0781
- The information below is about IL_4WF9_099
- Detailed Annotation
- tSH-tHS-tHW
- Broad Annotation
- tSH-tHS-tHW
- Motif group
- IL_04638.4
- Basepair signature
- cWW-tSH-tHW-tHS-L-cWW-L-L
- Number of instances in this motif group
- 6
Unit IDs
6YHS|1|1|U|2625
6YHS|1|1|U|2626
6YHS|1|1|G|2627
6YHS|1|1|A|2628
6YHS|1|1|G|2629
*
6YHS|1|1|C|2763
6YHS|1|1|A|2764
6YHS|1|1|A|2765
6YHS|1|1|G|2766
6YHS|1|1|A|2767
6YHS|1|1|U|2768
6YHS|1|1|A|2769
6YHS|1|1|A|2770
6YHS|1|1|G|2771
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain B
- 50S ribosomal protein L3
- Chain F
- 50S ribosomal protein L13
Coloring options: