IL_6YHS_100
3D structure
- PDB id
- 6YHS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Acinetobacter baumannii ribosome-amikacin complex - 50S subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- AUCCC*GAACU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6YHS_100 not in the Motif Atlas
- Geometric match to IL_7RQB_114
- Geometric discrepancy: 0.1373
- The information below is about IL_7RQB_114
- Detailed Annotation
- Symmetric double minor groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_58103.6
- Basepair signature
- cWW-cWS-L-tSW-L-cWW
- Number of instances in this motif group
- 8
Unit IDs
6YHS|1|5|A|33
6YHS|1|5|U|34
6YHS|1|5|C|35
6YHS|1|5|C|36
6YHS|1|5|C|37
*
6YHS|1|5|G|43
6YHS|1|5|A|44
6YHS|1|5|A|45
6YHS|1|5|C|46
6YHS|1|5|U|47
Current chains
- Chain 5
- 5S ribosomal RNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain D
- 50S ribosomal protein L5
- Chain K
- 50S ribosomal protein L18
Coloring options: