IL_6YLG_048

3D structure

PDB id

6YLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rix1-Rea1 pre-60S particle - 60S core, body 1 (rigid body refinement)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

6YLG|1|1|A|1263

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YLG_048 not in the Motif Atlas

Geometric match to IL_1MMS_002

Geometric discrepancy: 0.1322

The information below is about IL_1MMS_002

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_51387.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

21

Unit IDs

6YLG|1|1|G|1262
6YLG|1|1|A|1263
6YLG|1|1|G|1264
6YLG|1|1|U|1265
6YLG|1|1|G|1266
*
6YLG|1|1|C|1275
6YLG|1|1|U|1276
6YLG|1|1|C|1277

Current chains

Chain 1

25S rRNA

Nearby chains

Chain W

Ribosome assembly factor MRT4

Chain q

60S ribosomal protein L12-A

Chain r

Ribosome biogenesis protein NSA2