IL_6YLG_063

3D structure

PDB id

6YLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rix1-Rea1 pre-60S particle - 60S core, body 1 (rigid body refinement)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UUAAC*GGAAGA

Length

11 nucleotides

Bulged bases

6YLG|1|1|G|1751

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YLG_063 not in the Motif Atlas

Homologous match to IL_8C3A_077

Geometric discrepancy: 0.0714

The information below is about IL_8C3A_077

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_69313.1

Basepair signature

cWW-tWH-tHH-tHS-cWW

Number of instances in this motif group

2

Unit IDs

6YLG|1|1|U|1694
6YLG|1|1|U|1695
6YLG|1|1|A|1696
6YLG|1|1|A|1697
6YLG|1|1|C|1698
*
6YLG|1|1|G|1747
6YLG|1|1|G|1748
6YLG|1|1|A|1749
6YLG|1|1|A|1750
6YLG|1|1|G|1751
6YLG|1|1|A|1752

Current chains

Chain 1

25S rRNA

Nearby chains

Chain g

60S ribosomal protein L34-A

Chain k

60S ribosomal protein L38