3D structure

PDB id
6YLG (explore in PDB, NAKB, or RNA 3D Hub)
Description
Rix1-Rea1 pre-60S particle - 60S core, body 1 (rigid body refinement)
Experimental method
ELECTRON MICROSCOPY
Resolution
3 Å

Loop

Sequence
CGAUGG*UGUUGACG
Length
14 nucleotides
Bulged bases
6YLG|1|1|U|2159, 6YLG|1|1|U|2175, 6YLG|1|1|C|2179
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6YLG_074 not in the Motif Atlas
Homologous match to IL_5TBW_083
Geometric discrepancy: 0.0952
The information below is about IL_5TBW_083
Detailed Annotation
Kink-turn related
Broad Annotation
No text annotation
Motif group
IL_64509.1
Basepair signature
cWW-tWW-tWW-tSS-L-cWW
Number of instances in this motif group
2

Unit IDs

6YLG|1|1|C|2156
6YLG|1|1|G|2157
6YLG|1|1|A|2158
6YLG|1|1|U|2159
6YLG|1|1|G|2160
6YLG|1|1|G|2161
*
6YLG|1|1|U|2173
6YLG|1|1|G|2174
6YLG|1|1|U|2175
6YLG|1|1|U|2176
6YLG|1|1|G|2177
6YLG|1|1|A|2178
6YLG|1|1|C|2179
6YLG|1|1|G|2180

Current chains

Chain 1
25S rRNA

Nearby chains

Chain A
60S ribosomal protein L2-A
Chain p
60S ribosomal protein L43-A
Chain t
Protein SDA1

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