IL_6YLG_079

3D structure

PDB id

6YLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rix1-Rea1 pre-60S particle - 60S core, body 1 (rigid body refinement)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UCAAAGU*AACCAAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YLG_079 not in the Motif Atlas

Homologous match to IL_8C3A_093

Geometric discrepancy: 0.1178

The information below is about IL_8C3A_093

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36973.8

Basepair signature

cWW-tSH-L-R-L-R-L-R-cWW-cWW

Number of instances in this motif group

3

Unit IDs

6YLG|1|1|U|2211
6YLG|1|1|C|2212
6YLG|1|1|A|2213
6YLG|1|1|A|2214
6YLG|1|1|A|2215
6YLG|1|1|G|2216
6YLG|1|1|U|2217
*
6YLG|1|1|A|2228
6YLG|1|1|A|2229
6YLG|1|1|C|2230
6YLG|1|1|C|2231
6YLG|1|1|A|2232
6YLG|1|1|A|2233
6YLG|1|1|G|2234

Current chains

Chain 1

25S rRNA

Nearby chains

Chain i

60S ribosomal protein L36-A