IL_6YLG_109

3D structure

PDB id

6YLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rix1-Rea1 pre-60S particle - 60S core, body 1 (rigid body refinement)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUUG*CUUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YLG_109 not in the Motif Atlas

Geometric match to IL_6MWN_005

Geometric discrepancy: 0.1033

The information below is about IL_6MWN_005

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71194.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

6YLG|1|1|C|3235
6YLG|1|1|U|3236
6YLG|1|1|U|3237
6YLG|1|1|G|3238
*
6YLG|1|1|C|3249
6YLG|1|1|U|3250
6YLG|1|1|U|3251
6YLG|1|1|G|3252

Current chains

Chain 1

25S rRNA

Nearby chains

Chain O

60S ribosomal protein L16-A