IL_6YLG_114

3D structure

PDB id

6YLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rix1-Rea1 pre-60S particle - 60S core, body 1 (rigid body refinement)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGUAAG*CUGAG

Length

11 nucleotides

Bulged bases

6YLG|1|1|G|3369

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YLG_114 not in the Motif Atlas

Homologous match to IL_8C3A_139

Geometric discrepancy: 0.105

The information below is about IL_8C3A_139

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_83162.8

Basepair signature

cWW-cWW-tSH-cWW-tHH-L

Number of instances in this motif group

4

Unit IDs

6YLG|1|1|U|3332
6YLG|1|1|G|3333
6YLG|1|1|U|3334
6YLG|1|1|A|3335
6YLG|1|1|A|3336
6YLG|1|1|G|3337
*
6YLG|1|1|C|3367
6YLG|1|1|U|3368
6YLG|1|1|G|3369
6YLG|1|1|A|3370
6YLG|1|1|G|3371

Current chains

Chain 1

25S rRNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain b

Nucleolar GTP-binding protein 1

Chain u

Ribosome biogenesis protein RLP24