IL_6YLG_132

3D structure

PDB id

6YLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rix1-Rea1 pre-60S particle - 60S core, body 1 (rigid body refinement)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAG*UCU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YLG_132 not in the Motif Atlas

Geometric match to IL_8C3A_427

Geometric discrepancy: 0.1218

The information below is about IL_8C3A_427

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_10289.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

237

Unit IDs

6YLG|1|1|G|2251
6YLG|1|1|A|2252
6YLG|1|1|G|2253
*
6YLG|1|1|U|2264
6YLG|1|1|C|2265
6YLG|1|1|U|2266

Current chains

Chain 1

25S rRNA

Nearby chains

Chain K

Pre-rRNA-processing protein IPI1

Chain m

Nucleolar GTP-binding protein 2

Chain t

Protein SDA1