IL_6YLH_012

3D structure

PDB id

6YLH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rix1-Rea1 pre-60S particle - full composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAG*CUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YLH_012 not in the Motif Atlas

Geometric match to IL_4KQ0_002

Geometric discrepancy: 0.1132

The information below is about IL_4KQ0_002

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.6

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

51

Unit IDs

6YLH|1|1|G|272
6YLH|1|1|A|273
6YLH|1|1|G|274
*
6YLH|1|1|C|291
6YLH|1|1|U|292
6YLH|1|1|C|293

Current chains

Chain 1

25S rRNA

Nearby chains

Chain N

60S ribosomal protein L15-A

Chain i

60S ribosomal protein L36-A