IL_6YLH_069
3D structure
- PDB id
- 6YLH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rix1-Rea1 pre-60S particle - full composite structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- AGUCGG*CUGU
- Length
- 10 nucleotides
- Bulged bases
- 6YLH|1|1|G|2335
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6YLH_069 not in the Motif Atlas
- Geometric match to IL_5TBW_077
- Geometric discrepancy: 0.1397
- The information below is about IL_5TBW_077
- Detailed Annotation
- Intercalated tWH
- Broad Annotation
- Intercalated tWH
- Motif group
- IL_06455.1
- Basepair signature
- cWW-L-R-L-cWW-L-L
- Number of instances in this motif group
- 7
Unit IDs
6YLH|1|1|A|1901
6YLH|1|1|G|1902
6YLH|1|1|U|1903
6YLH|1|1|C|1904
6YLH|1|1|G|1905
6YLH|1|1|G|1906
*
6YLH|1|1|C|2333
6YLH|1|1|U|2334
6YLH|1|1|G|2335
6YLH|1|1|U|2336
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain B
- 60S ribosomal protein L3
- Chain I
- Bud site selection protein 20
- Chain V
- 60S ribosomal protein L23-A
- Chain m
- Nucleolar GTP-binding protein 2
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