IL_6YLH_139

3D structure

PDB id

6YLH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rix1-Rea1 pre-60S particle - full composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CC*GUAG

Length

6 nucleotides

Bulged bases

6YLH|1|3|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YLH_139 not in the Motif Atlas

Homologous match to IL_8P9A_366

Geometric discrepancy: 0.1972

The information below is about IL_8P9A_366

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_15052.4

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

8

Unit IDs

6YLH|1|3|C|28
6YLH|1|3|C|29
*
6YLH|1|3|G|49
6YLH|1|3|U|50
6YLH|1|3|A|51
6YLH|1|3|G|52

Current chains

Chain 3

5S rRNA

Nearby chains

Chain D

60S ribosomal protein L5

Chain J

60S ribosomal protein L11-A