IL_6YLX_012

3D structure

PDB id

6YLX (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-60S State NE1 (TAP-Flag-Nop53)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GAG*CUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YLX_012 not in the Motif Atlas

Geometric match to IL_4KQ0_004

Geometric discrepancy: 0.1284

The information below is about IL_4KQ0_004

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.6

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

51

Unit IDs

6YLX|1|1|G|272
6YLX|1|1|A|273
6YLX|1|1|G|274
*
6YLX|1|1|C|291
6YLX|1|1|U|292
6YLX|1|1|C|293

Current chains

Chain 1

25S rRNA

Nearby chains

Chain N

60S ribosomal protein L15-A

Chain i

60S ribosomal protein L36-A

Chain w

27S pre-rRNA (guanosine(2922)-2'-O)-methyltransferase