IL_6YLX_031

3D structure

PDB id

6YLX (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-60S State NE1 (TAP-Flag-Nop53)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGUU*AUC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YLX_031 not in the Motif Atlas

Geometric match to IL_5B2P_002

Geometric discrepancy: 0.1968

The information below is about IL_5B2P_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

6YLX|1|1|G|869
6YLX|1|1|G|870
6YLX|1|1|U|871
6YLX|1|1|U|872
*
6YLX|1|1|A|888
6YLX|1|1|U|889
6YLX|1|1|C|890

Current chains

Chain 1

25S rRNA

Nearby chains

Chain j

60S ribosomal protein L37-A