IL_6YLX_100
3D structure
- PDB id
- 6YLX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- pre-60S State NE1 (TAP-Flag-Nop53)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- AGAG*CGAU
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6YLX_100 not in the Motif Atlas
- Homologous match to IL_8C3A_141
- Geometric discrepancy: 0.1688
- The information below is about IL_8C3A_141
- Detailed Annotation
- Double sheared; A in syn
- Broad Annotation
- Double sheared
- Motif group
- IL_09705.12
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 35
Unit IDs
6YLX|1|1|A|3342
6YLX|1|1|G|3343
6YLX|1|1|A|3344
6YLX|1|1|G|3345
*
6YLX|1|1|C|3360
6YLX|1|1|G|3361
6YLX|1|1|A|3362
6YLX|1|1|U|3363
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain R
- 60S ribosomal protein L19-A
- Chain u
- Ribosome biogenesis protein RLP24
- Chain w
- 27S pre-rRNA (guanosine(2922)-2'-O)-methyltransferase
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