IL_6YLY_025

3D structure

PDB id

6YLY (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-60S State NE2 (TAP-Flag-Nop53)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUGAUG*CGGAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YLY_025 not in the Motif Atlas

Homologous match to IL_8C3A_028

Geometric discrepancy: 0.1739

The information below is about IL_8C3A_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6YLY|1|1|C|758
6YLY|1|1|U|759
6YLY|1|1|G|760
6YLY|1|1|A|761
6YLY|1|1|U|762
6YLY|1|1|G|763
*
6YLY|1|1|C|768
6YLY|1|1|G|769
6YLY|1|1|G|770
6YLY|1|1|A|771
6YLY|1|1|U|772
6YLY|1|1|G|773

Current chains

Chain 1

25S rRNA

Nearby chains

Chain L

60S ribosomal protein L13-A

Chain a

60S ribosomal protein L28