IL_6YLY_026

3D structure

PDB id

6YLY (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-60S State NE2 (TAP-Flag-Nop53)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CCG*CUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YLY_026 not in the Motif Atlas

Geometric match to IL_7A0S_014

Geometric discrepancy: 0.1685

The information below is about IL_7A0S_014

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

6YLY|1|1|C|803
6YLY|1|1|C|804
6YLY|1|1|G|805
*
6YLY|1|1|C|938
6YLY|1|1|U|939
6YLY|1|1|G|940

Current chains

Chain 1

25S rRNA

Nearby chains

Chain C

60S ribosomal protein L4-A