IL_6YLY_038

3D structure

PDB id

6YLY (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-60S State NE2 (TAP-Flag-Nop53)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UUU*AGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YLY_038 not in the Motif Atlas

Homologous match to IL_8C3A_050

Geometric discrepancy: 0.2968

The information below is about IL_8C3A_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_52767.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

6YLY|1|1|U|1123
6YLY|1|1|U|1124
6YLY|1|1|U|1125
*
6YLY|1|1|A|1133
6YLY|1|1|G|1134
6YLY|1|1|A|1135

Current chains

Chain 1

25S rRNA

Nearby chains

Chain s

Nuclear GTP-binding protein NUG1