IL_6YMI_010

3D structure

PDB id

6YMI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the SAM-SAH riboswitch with AMP

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

CAAC*GGCG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YMI_010 not in the Motif Atlas

Geometric match to IL_6YML_002

Geometric discrepancy: 0.0675

The information below is about IL_6YML_002

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.1

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

44

Unit IDs

6YMI|1|M|C|12
6YMI|1|M|A|13
6YMI|1|M|A|14
6YMI|1|M|C|15
*
6YMI|1|M|G|24
6YMI|1|M|G|25
6YMI|1|M|C|26
6YMI|1|M|G|27

Current chains

Chain M

Chains: A,C,F,I,M,O

Nearby chains

Chain C

Chains: A,C,F,I,M,O

Chain D

Chains: B,D,G,J,N,P

Chain N

Chains: B,D,G,J,N,P