IL_6YPU_012

3D structure

PDB id

6YPU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Acinetobacter baumannii ribosome-amikacin complex - 30S subunit body

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGACAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

6YPU|1|2|U|169

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YPU_012 not in the Motif Atlas

Homologous match to IL_6CZR_121

Geometric discrepancy: 0.4398

The information below is about IL_6CZR_121

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.5

Basepair signature

cWW-L-R-tWH-tWH-tHW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

6YPU|1|2|G|143
6YPU|1|2|G|144
6YPU|1|2|A|145
6YPU|1|2|C|146
6YPU|1|2|A|147
6YPU|1|2|A|148
6YPU|1|2|C|149
*
6YPU|1|2|G|164
6YPU|1|2|C|165
6YPU|1|2|U|166
6YPU|1|2|A|167
6YPU|1|2|A|168
6YPU|1|2|U|169
6YPU|1|2|A|170
6YPU|1|2|C|171

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain 4

Small subunit ribosomal RNA; SSU rRNA

Chain u

30S ribosomal protein S20