IL_6YPU_019

3D structure

PDB id

6YPU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Acinetobacter baumannii ribosome-amikacin complex - 30S subunit body

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YPU_019 not in the Motif Atlas

Homologous match to IL_5J7L_020

Geometric discrepancy: 0.1197

The information below is about IL_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

6YPU|1|2|U|405
6YPU|1|2|G|406
6YPU|1|2|A|407
6YPU|1|2|A|408
6YPU|1|2|G|409
6YPU|1|2|A|410
6YPU|1|2|A|411
6YPU|1|2|G|412
*
6YPU|1|2|U|423
6YPU|1|2|G|424
6YPU|1|2|U|425
6YPU|1|2|A|426
6YPU|1|2|A|427
6YPU|1|2|A|428
6YPU|1|2|G|429

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain e

30S ribosomal protein S4