IL_6YPU_021

3D structure

PDB id

6YPU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Acinetobacter baumannii ribosome-amikacin complex - 30S subunit body

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGAGG*CGUUAC

Length

11 nucleotides

Bulged bases

6YPU|1|2|U|482

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YPU_021 not in the Motif Atlas

Geometric match to IL_5J7L_022

Geometric discrepancy: 0.0844

The information below is about IL_5J7L_022

Detailed Annotation

tSH-tHW-tWW

Broad Annotation

No text annotation

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

6YPU|1|2|G|442
6YPU|1|2|G|443
6YPU|1|2|A|444
6YPU|1|2|G|445
6YPU|1|2|G|446
*
6YPU|1|2|C|480
6YPU|1|2|G|481
6YPU|1|2|U|482
6YPU|1|2|U|483
6YPU|1|2|A|484
6YPU|1|2|C|485

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain e

30S ribosomal protein S4

Chain q

30S ribosomal protein S16