IL_6YPU_037

3D structure

PDB id

6YPU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Acinetobacter baumannii ribosome-amikacin complex - 30S subunit body

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GA*UAC

Length

5 nucleotides

Bulged bases

6YPU|1|4|A|1391

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YPU_037 not in the Motif Atlas

Homologous match to IL_4LFB_035

Geometric discrepancy: 0.1188

The information below is about IL_4LFB_035

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

160

Unit IDs

6YPU|1|2|G|919
6YPU|1|2|A|920
*
6YPU|1|4|U|1390
6YPU|1|4|A|1391
6YPU|1|4|C|1392

Current chains

Chain 2

16S ribosomal RNA

Chain 4

16S ribosomal RNA

Nearby chains

Chain f

30S ribosomal protein S5