IL_6YPU_043

3D structure

PDB id

6YPU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Acinetobacter baumannii ribosome-amikacin complex - 30S subunit body

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGAG*UGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YPU_043 not in the Motif Atlas

Homologous match to IL_5J7L_062

Geometric discrepancy: 0.1113

The information below is about IL_5J7L_062

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

6YPU|1|4|G|1413
6YPU|1|4|G|1414
6YPU|1|4|A|1415
6YPU|1|4|G|1416
*
6YPU|1|4|U|1478
6YPU|1|4|G|1479
6YPU|1|4|A|1480
6YPU|1|4|C|1481

Current chains

Chain 4

16S ribosomal RNA

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA