IL_6YS3_006
3D structure
- PDB id
- 6YS3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 50S ribosomal subunit at 2.58 Angstroms with modeled GBC SecM peptide
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.58 Å
Loop
- Sequence
- CGAUGGUAG*CGAGAGUAG
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6YS3_006 not in the Motif Atlas
- Homologous match to IL_5J7L_359
- Geometric discrepancy: 0.0702
- The information below is about IL_5J7L_359
- Detailed Annotation
- Bacterial 5S Loop E
- Broad Annotation
- Loop E
- Motif group
- IL_56455.6
- Basepair signature
- cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW
- Number of instances in this motif group
- 7
Unit IDs
6YS3|1|a|C|71
6YS3|1|a|G|72
6YS3|1|a|A|73
6YS3|1|a|U|74
6YS3|1|a|G|75
6YS3|1|a|G|76
6YS3|1|a|U|77
6YS3|1|a|A|78
6YS3|1|a|G|79
*
6YS3|1|a|C|97
6YS3|1|a|G|98
6YS3|1|a|A|99
6YS3|1|a|G|100
6YS3|1|a|A|101
6YS3|1|a|G|102
6YS3|1|a|U|103
6YS3|1|a|A|104
6YS3|1|a|G|105
Current chains
- Chain a
- 5S rRNA
Nearby chains
- Chain 2
- 50S ribosomal protein L30
- Chain b
- Large subunit ribosomal RNA; LSU rRNA
- Chain m
- 50S ribosomal protein L16
- Chain w
- 50S ribosomal protein L25
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