IL_6YS3_014

3D structure

PDB id

6YS3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 50S ribosomal subunit at 2.58 Angstroms with modeled GBC SecM peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.58 Å

Loop

Sequence

CCAGUAG*CGAACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YS3_014 not in the Motif Atlas

Homologous match to IL_5J7L_251

Geometric discrepancy: 0.0714

The information below is about IL_5J7L_251

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_26307.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

6YS3|1|b|C|239
6YS3|1|b|C|240
6YS3|1|b|A|241
6YS3|1|b|G|242
6YS3|1|b|U|243
6YS3|1|b|A|244
6YS3|1|b|G|245
*
6YS3|1|b|C|253
6YS3|1|b|G|254
6YS3|1|b|A|255
6YS3|1|b|A|256
6YS3|1|b|C|257
6YS3|1|b|G|258

Current chains

Chain b

23S rRNA

Nearby chains

Chain 7

50S ribosomal protein L35

Chain l

50S ribosomal protein L15