IL_6YS3_023

3D structure

PDB id

6YS3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 50S ribosomal subunit at 2.58 Angstroms with modeled GBC SecM peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.58 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

6YS3|1|b|G|803, 6YS3|1|b|G|807

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YS3_023 not in the Motif Atlas

Geometric match to IL_7RQB_018

Geometric discrepancy: 0.0684

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

6YS3|1|b|G|676
6YS3|1|b|A|677
6YS3|1|b|A|678
6YS3|1|b|A|679
6YS3|1|b|C|680
*
6YS3|1|b|G|801
6YS3|1|b|A|802
6YS3|1|b|G|803
6YS3|1|b|A|804
6YS3|1|b|U|805
6YS3|1|b|A|806
6YS3|1|b|G|807
6YS3|1|b|C|808

Current chains

Chain b

23S rRNA

Nearby chains

Chain e

50S ribosomal protein L4

Chain l

50S ribosomal protein L15