IL_6YS3_026

3D structure

PDB id

6YS3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 50S ribosomal subunit at 2.58 Angstroms with modeled GBC SecM peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.58 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YS3_026 not in the Motif Atlas

Geometric match to IL_7RQB_021

Geometric discrepancy: 0.0763

The information below is about IL_7RQB_021

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_56467.8

Basepair signature

cWW-tSH-tSH-tHS-cWW

Number of instances in this motif group

29

Unit IDs

6YS3|1|b|U|705
6YS3|1|b|G|706
6YS3|1|b|A|707
6YS3|1|b|A|708
6YS3|1|b|G|709
*
6YS3|1|b|U|726
6YS3|1|b|G|727
6YS3|1|b|G|728
6YS3|1|b|A|729
6YS3|1|b|G|730

Current chains

Chain b

23S rRNA

Nearby chains

Chain c

50S ribosomal protein L2