IL_6YS3_028
3D structure
- PDB id
- 6YS3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 50S ribosomal subunit at 2.58 Angstroms with modeled GBC SecM peptide
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.58 Å
Loop
- Sequence
- GGG*CAAUC
- Length
- 8 nucleotides
- Bulged bases
- 6YS3|1|b|G|778, 6YS3|1|b|A|790, 6YS3|1|b|A|791
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6YS3_028 not in the Motif Atlas
- Geometric match to IL_5J7L_265
- Geometric discrepancy: 0.1098
- The information below is about IL_5J7L_265
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_06549.2
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
6YS3|1|b|G|777
6YS3|1|b|G|778
6YS3|1|b|G|779
*
6YS3|1|b|C|789
6YS3|1|b|A|790
6YS3|1|b|A|791
6YS3|1|b|U|792
6YS3|1|b|C|793
Current chains
- Chain b
- 23S rRNA
Nearby chains
- Chain 6
- 50S ribosomal protein L34
- Chain c
- 50S ribosomal protein L2
- Chain s
- 50S ribosomal protein L22
- Chain z
- Gamma-crystallin B
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