IL_6YS3_031
3D structure
- PDB id
- 6YS3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 50S ribosomal subunit at 2.58 Angstroms with modeled GBC SecM peptide
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.58 Å
Loop
- Sequence
- GGGGUAG*CGAAUAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6YS3_031 not in the Motif Atlas
- Geometric match to IL_5J7L_270
- Geometric discrepancy: 0.077
- The information below is about IL_5J7L_270
- Detailed Annotation
- 7x7 Sarcin-Ricin with intercalated A; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_29198.2
- Basepair signature
- cWW-cWW-L-R-cSH-R-tWH-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
6YS3|1|b|G|858
6YS3|1|b|G|859
6YS3|1|b|G|860
6YS3|1|b|G|861
6YS3|1|b|U|862
6YS3|1|b|A|863
6YS3|1|b|G|864
*
6YS3|1|b|C|917
6YS3|1|b|G|918
6YS3|1|b|A|919
6YS3|1|b|A|920
6YS3|1|b|U|921
6YS3|1|b|A|922
6YS3|1|b|C|923
Current chains
- Chain b
- 23S rRNA
Nearby chains
- Chain 2
- 50S ribosomal protein L30
- Chain a
- 5S ribosomal RNA; 5S rRNA
- Chain m
- 50S ribosomal protein L16
- Chain y
- 50S ribosomal protein L27
Coloring options: