IL_6YS3_033
3D structure
- PDB id
- 6YS3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 50S ribosomal subunit at 2.58 Angstroms with modeled GBC SecM peptide
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.58 Å
Loop
- Sequence
- GCACU*AAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6YS3_033 not in the Motif Atlas
- Homologous match to IL_5J7L_272
- Geometric discrepancy: 0.0688
- The information below is about IL_5J7L_272
- Detailed Annotation
- C-loop with bulged stacked A's
- Broad Annotation
- C-loop
- Motif group
- IL_26222.2
- Basepair signature
- cWW-cWS-cSH-tWH-R-L-R-cWW
- Number of instances in this motif group
- 6
Unit IDs
6YS3|1|b|G|866
6YS3|1|b|C|867
6YS3|1|b|A|868
6YS3|1|b|C|869
6YS3|1|b|U|870
*
6YS3|1|b|A|911
6YS3|1|b|A|912
6YS3|1|b|A|913
6YS3|1|b|C|914
Current chains
- Chain b
- 23S rRNA
Nearby chains
- Chain a
- 5S ribosomal RNA; 5S rRNA
- Chain m
- 50S ribosomal protein L16
Coloring options: