IL_6YS3_035

3D structure

PDB id

6YS3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 50S ribosomal subunit at 2.58 Angstroms with modeled GBC SecM peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.58 Å

Loop

Sequence

GCAAG*CAACC

Length

10 nucleotides

Bulged bases

6YS3|1|b|A|879

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YS3_035 not in the Motif Atlas

Geometric match to IL_5TBW_023

Geometric discrepancy: 0.3547

The information below is about IL_5TBW_023

Detailed Annotation

UAA/GAN variation

Broad Annotation

UAA/GAN variation

Motif group

IL_07235.3

Basepair signature

cWW-tSH-L-tHS-cWW

Number of instances in this motif group

8

Unit IDs

6YS3|1|b|G|877
6YS3|1|b|C|878
6YS3|1|b|A|879
6YS3|1|b|A|880
6YS3|1|b|G|881
*
6YS3|1|b|C|900
6YS3|1|b|A|901
6YS3|1|b|A|902
6YS3|1|b|C|903
6YS3|1|b|C|904

Current chains

Chain b

23S rRNA

Nearby chains

Chain m

50S ribosomal protein L16