3D structure

PDB id
6YS3 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the 50S ribosomal subunit at 2.58 Angstroms with modeled GBC SecM peptide
Experimental method
ELECTRON MICROSCOPY
Resolution
2.58 Å

Loop

Sequence
UG*CCUG
Length
6 nucleotides
Bulged bases
None detected
QA status
Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6YS3_043 not in the Motif Atlas
Geometric match to IL_6AZ4_001
Geometric discrepancy: 0.3237
The information below is about IL_6AZ4_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_69145.1
Basepair signature
cWW-L-cWW-L
Number of instances in this motif group
5

Unit IDs

6YS3|1|b|U|1037
6YS3|1|b|G|1039
*
6YS3|1|b|C|1119
6YS3|1|b|C|1120
6YS3|1|b|U|1121
6YS3|1|b|G|1122

Current chains

Chain b
23S rRNA

Nearby chains

Chain 8
50S ribosomal protein L36
Chain m
50S ribosomal protein L16
Chain w
50S ribosomal protein L25

Coloring options:


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