IL_6YS3_045
3D structure
- PDB id
- 6YS3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 50S ribosomal subunit at 2.58 Angstroms with modeled GBC SecM peptide
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.58 Å
Loop
- Sequence
- CGU*AGUG
- Length
- 7 nucleotides
- Bulged bases
- 6YS3|1|b|G|1250
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6YS3_045 not in the Motif Atlas
- Homologous match to IL_5J7L_286
- Geometric discrepancy: 0.1275
- The information below is about IL_5J7L_286
- Detailed Annotation
- Isolated cWS basepair
- Broad Annotation
- No text annotation
- Motif group
- IL_42997.3
- Basepair signature
- cWW-L-R-cWW
- Number of instances in this motif group
- 20
Unit IDs
6YS3|1|b|C|1198
6YS3|1|b|G|1199
6YS3|1|b|U|1200
*
6YS3|1|b|A|1249
6YS3|1|b|G|1250
6YS3|1|b|U|1251
6YS3|1|b|G|1252
Current chains
- Chain b
- 23S rRNA
Nearby chains
- Chain e
- 50S ribosomal protein L4
- Chain l
- 50S ribosomal protein L15
- Chain q
- 50S ribosomal protein L20
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