IL_6YS3_050

3D structure

PDB id

6YS3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 50S ribosomal subunit at 2.58 Angstroms with modeled GBC SecM peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.58 Å

Loop

Sequence

CCAAC*GGG

Length

8 nucleotides

Bulged bases

6YS3|1|b|G|1334

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YS3_050 not in the Motif Atlas

Homologous match to IL_5J7L_291

Geometric discrepancy: 0.0957

The information below is about IL_5J7L_291

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.11

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

19

Unit IDs

6YS3|1|b|C|1321
6YS3|1|b|C|1322
6YS3|1|b|A|1323
6YS3|1|b|A|1324
6YS3|1|b|C|1325
*
6YS3|1|b|G|1333
6YS3|1|b|G|1334
6YS3|1|b|G|1335

Current chains

Chain b

23S rRNA

Nearby chains

Chain s

50S ribosomal protein L22

Chain t

50S ribosomal protein L23

Chain z

Gamma-crystallin B