IL_6YS3_056
3D structure
- PDB id
- 6YS3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 50S ribosomal subunit at 2.58 Angstroms with modeled GBC SecM peptide
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.58 Å
Loop
- Sequence
- GAAG*CCUGC
- Length
- 9 nucleotides
- Bulged bases
- 6YS3|1|b|U|1561
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6YS3_056 not in the Motif Atlas
- Homologous match to IL_5J7L_296
- Geometric discrepancy: 0.1647
- The information below is about IL_5J7L_296
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_58112.2
- Basepair signature
- cWW-cWW-L-R-cWW
- Number of instances in this motif group
- 4
Unit IDs
6YS3|1|b|G|1434
6YS3|1|b|A|1435
6YS3|1|b|A|1436
6YS3|1|b|G|1437
*
6YS3|1|b|C|1559
6YS3|1|b|C|1560
6YS3|1|b|U|1561
6YS3|1|b|G|1562
6YS3|1|b|C|1563
Current chains
- Chain b
- 23S rRNA
Nearby chains
- Chain c
- 50S ribosomal protein L2
Coloring options: