IL_6YS3_057

3D structure

PDB id

6YS3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 50S ribosomal subunit at 2.58 Angstroms with modeled GBC SecM peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.58 Å

Loop

Sequence

CUAU*AAAUG

Length

9 nucleotides

Bulged bases

6YS3|1|b|U|1556

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YS3_057 not in the Motif Atlas

Homologous match to IL_5J7L_297

Geometric discrepancy: 0.1751

The information below is about IL_5J7L_297

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_99646.2

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

6

Unit IDs

6YS3|1|b|C|1439
6YS3|1|b|U|1440
6YS3|1|b|A|1441
6YS3|1|b|U|1442
*
6YS3|1|b|A|1553
6YS3|1|b|A|1554
6YS3|1|b|A|1555
6YS3|1|b|U|1556
6YS3|1|b|G|1557

Current chains

Chain b

23S rRNA

Nearby chains