IL_6YS3_059

3D structure

PDB id

6YS3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 50S ribosomal subunit at 2.58 Angstroms with modeled GBC SecM peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.58 Å

Loop

Sequence

UGUAG*UGAGG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YS3_059 not in the Motif Atlas

Homologous match to IL_5J7L_300

Geometric discrepancy: 0.1157

The information below is about IL_5J7L_300

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_38862.4

Basepair signature

cWW-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

6YS3|1|b|U|1476
6YS3|1|b|G|1477
6YS3|1|b|U|1478
6YS3|1|b|A|1479
6YS3|1|b|G|1480
*
6YS3|1|b|U|1515
6YS3|1|b|G|1516
6YS3|1|b|A|1517
6YS3|1|b|G|1518
6YS3|1|b|G|1519

Current chains

Chain b

23S rRNA

Nearby chains