IL_6YS3_062

3D structure

PDB id

6YS3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 50S ribosomal subunit at 2.58 Angstroms with modeled GBC SecM peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.58 Å

Loop

Sequence

CGAG*UGAAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YS3_062 not in the Motif Atlas

Homologous match to IL_5J7L_303

Geometric discrepancy: 0.1373

The information below is about IL_5J7L_303

Detailed Annotation

UAA/GAN variation

Broad Annotation

UAA/GAN variation

Motif group

IL_23774.1

Basepair signature

cWW-L-R-L-tHS-cWW

Number of instances in this motif group

11

Unit IDs

6YS3|1|b|C|1528
6YS3|1|b|G|1529
6YS3|1|b|A|1530
6YS3|1|b|G|1531
*
6YS3|1|b|U|1544
6YS3|1|b|G|1545
6YS3|1|b|A|1546
6YS3|1|b|A|1547
6YS3|1|b|G|1548

Current chains

Chain b

23S rRNA

Nearby chains