IL_6YS3_104
3D structure
- PDB id
- 6YS3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 50S ribosomal subunit at 2.58 Angstroms with modeled GBC SecM peptide
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.58 Å
Loop
- Sequence
- GAUAAG*CGAAAC
- Length
- 12 nucleotides
- Bulged bases
- 6YS3|1|b|A|2769
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6YS3_104 not in the Motif Atlas
- Homologous match to IL_5J7L_350
- Geometric discrepancy: 0.0778
- The information below is about IL_5J7L_350
- Detailed Annotation
- UAA/GAN with extra cWW
- Broad Annotation
- No text annotation
- Motif group
- IL_49767.8
- Basepair signature
- cWW-cWW-tWH-L-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
6YS3|1|b|G|2741
6YS3|1|b|A|2742
6YS3|1|b|U|2743
6YS3|1|b|A|2744
6YS3|1|b|A|2745
6YS3|1|b|G|2746
*
6YS3|1|b|C|2766
6YS3|1|b|G|2767
6YS3|1|b|A|2768
6YS3|1|b|A|2769
6YS3|1|b|A|2770
6YS3|1|b|C|2771
Current chains
- Chain b
- 23S rRNA
Nearby chains
- Chain 8
- 50S ribosomal protein L36
- Chain g
- 50S ribosomal protein L6
- Chain j
- 50S ribosomal protein L13
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