IL_6YS3_113

3D structure

PDB id

6YS3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 50S ribosomal subunit at 2.58 Angstroms with modeled GBC SecM peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.58 Å

Loop

Sequence

GGAACUAGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YS3_113 not in the Motif Atlas

Homologous match to IL_5J7L_386

Geometric discrepancy: 0.0622

The information below is about IL_5J7L_386

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

6YS3|1|b|G|1668
6YS3|1|b|G|1669
6YS3|1|b|A|1670
6YS3|1|b|A|1671
6YS3|1|b|C|1672
6YS3|1|b|U|1673
6YS3|1|b|A|1674
6YS3|1|b|G|1675
6YS3|1|b|G|1676
*
6YS3|1|b|C|1994
6YS3|1|b|U|1995
6YS3|1|b|G|1996
6YS3|1|b|U|1997
6YS3|1|b|C|1998

Current chains

Chain b

23S rRNA

Nearby chains

Chain d

50S ribosomal protein L3

Chain k

50S ribosomal protein L14