IL_6YS5_016
3D structure
- PDB id
- 6YS5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Acinetobacter baumannii ribosome-amikacin complex - 30S subunit head
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GUUG*CUAAUC
- Length
- 10 nucleotides
- Bulged bases
- 6YS5|1|3|U|1254, 6YS5|1|3|A|1277
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6YS5_016 not in the Motif Atlas
- Homologous match to IL_4LFB_052
- Geometric discrepancy: 0.1894
- The information below is about IL_4LFB_052
- Detailed Annotation
- 180 degree turn
- Broad Annotation
- No text annotation
- Motif group
- IL_08849.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
6YS5|1|3|G|1252
6YS5|1|3|U|1253
6YS5|1|3|U|1254
6YS5|1|3|G|1255
*
6YS5|1|3|C|1274
6YS5|1|3|U|1275
6YS5|1|3|A|1276
6YS5|1|3|A|1277
6YS5|1|3|U|1278
6YS5|1|3|C|1279
Current chains
- Chain 3
- 16S ribosomal RNA
Nearby chains
- Chain d
- 30S ribosomal protein S3
- Chain k
- 30S ribosomal protein S10
- Chain o
- 30S ribosomal protein S14
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