IL_6YSI_015
3D structure
- PDB id
- 6YSI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Acinetobacter baumannii ribosome-tigecycline complex - 50S subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- UUAAC*GGGAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6YSI_015 not in the Motif Atlas
- Homologous match to IL_7RQB_016
- Geometric discrepancy: 0.0994
- The information below is about IL_7RQB_016
- Detailed Annotation
- AAA cross-strand stack
- Broad Annotation
- AAA cross-strand stack
- Motif group
- IL_17136.1
- Basepair signature
- cWW-tSH-tHW-tHS-cWW
- Number of instances in this motif group
- 24
Unit IDs
6YSI|1|1|U|597
6YSI|1|1|U|598
6YSI|1|1|A|599
6YSI|1|1|A|600
6YSI|1|1|C|601
*
6YSI|1|1|G|609
6YSI|1|1|G|610
6YSI|1|1|G|611
6YSI|1|1|A|612
6YSI|1|1|G|613
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain C
- 50S ribosomal protein L4
- Chain H
- 50S ribosomal protein L15
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