IL_6YSI_017
3D structure
- PDB id
- 6YSI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Acinetobacter baumannii ribosome-tigecycline complex - 50S subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- GAAAC*GUGAUAGC
- Length
- 13 nucleotides
- Bulged bases
- 6YSI|1|1|G|792, 6YSI|1|1|G|796
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6YSI_017 not in the Motif Atlas
- Homologous match to IL_7RQB_018
- Geometric discrepancy: 0.0912
- The information below is about IL_7RQB_018
- Detailed Annotation
- tHW-tHW cross-strand stack
- Broad Annotation
- No text annotation
- Motif group
- IL_17470.6
- Basepair signature
- cWW-tWW-L-R-tWH-L-cWW
- Number of instances in this motif group
- 7
Unit IDs
6YSI|1|1|G|665
6YSI|1|1|A|666
6YSI|1|1|A|667
6YSI|1|1|A|668
6YSI|1|1|C|669
*
6YSI|1|1|G|790
6YSI|1|1|U|791
6YSI|1|1|G|792
6YSI|1|1|A|793
6YSI|1|1|U|794
6YSI|1|1|A|795
6YSI|1|1|G|796
6YSI|1|1|C|797
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain C
- 50S ribosomal protein L4
- Chain H
- 50S ribosomal protein L15
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